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Population Genetics/Genomics

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IDTitleSection/TopicAuthorsKeywords
1137Application of molecular and morphological markers reveal population substructuring within the widely distributed A. xalapensis of MexicoBy Samantha Mihalic, Alexandra McElwee-Adame, M. Socorro González-Elizondo, Lluvia Flores-Renteria
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Population Genetics/GenomicsMihalic, Samantha; McElwee-Adame, Alexandra; Gonzalez Elizondo, Socorro; Flores-Renteria, Lluvia.Arbutus xalapensis  
Population Genetics
genetic structure
418Are small populations larger than they seem? Genetic insights into small, patchily distributed Drakaea glyptodon (Orchidaceae) populations
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Population Genetics/GenomicsTrapnell, Dorset; Smallwood, Patrick; Dixon, Kingsley; Phillips, Ryan.Chloroplast haplotypes
Population Genetics
Seed dispersal
Genetic diversity
gene flow
SSRs
Effective population size
980
Canceled
Assessment of sequencing bias in genomic-level projects using herbarium specimens
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Population Genetics/GenomicsMotley, M'Kayla; Hofford, Nate; Barrett, Craig; Beck, James; Khanal, Deva Raj; Kooyers, Nicholas; Latvis, Maribeth; Ramachandran, Dhanushya; Sutherland, Brittany; McKain, Michael; Sigel, Erin.invasive species
Comparative genomics
herbaria
684Carex subspathacea grazing lawns and their taxonomic affinity
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Population Genetics/GenomicsHarritt, Iris C.; Takebayashi, Naoki; Flint, Paul L.; Ruess, Roger W.; Wolf, Diana E..sedge
Grazing
Targeted enrichment
population genetic structure
Population genomics
588Clonal growth and outcrossing in the fern Osmunda claytoniana
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Population Genetics/GenomicsSteven, Janet; Decatur, George; Murasaki, Ryo.ferns
outcrossing
clonal growth
longevity
Osmunda
1113Conservation Genetics and Phylogeography of Fremont’s Leather Flower (Clematis fremontii)
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Population Genetics/GenomicsKrakowiak, Alaina.Clematis
Grasslands
Glades
phylogeography
conservation genetics
Population Genetics
biogeography
Rare plants
southeast
ddRAD-seq
RAD-seq
Ranunculaceae
Midwest
1001Conservation genetics of the threatened plant species Physaria filiformis (Missouri bladderpod) reveals strong genetic structure and a possible cryptic species
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Population Genetics/GenomicsEdwards, Christine; Tessier, Brooke; Swift, Joel; Bassuner, Burgund; Linan, Alexander; Albrecht, Matthew; Yatskievych, George.genetic structure
Brassicaeae
cryptic species
genetic diversity
conservation strategies
542Copy number variation in wild poplar
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Population Genetics/GenomicsWu, Yihan; Adams, Keith.genomics
RNA-seq
Whole genome re-sequencing
copy number variation
structural variation
Poplar
937Down but not out: Genetic variation after a bottleneck and subsequent discovery of additional plants in the rare Hawaiian shrub, Schiedea adamantis St. John (Caryophyllaceae)
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Population Genetics/GenomicsCulley, Theresa; Kuenzi Davis, Ashley; Ching, Susan N.; Sakai, Ann K.; Weller, Stephen G..Genetic diversity
Hawaiian Islands
Schiedea
Bottleneck
252Factors affecting the genetic diversity and implications for conservation in a clade of oceanic-island trees
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Population Genetics/GenomicsLinan, Alexander; Lowry, Porter II; Miller, Allison; Schatz, George; Sevathian, Jean Claude; Edwards, Christine.Ebenaceae
genetic diversity
Mauritius
Rodrigues
Réunion
genetic structure
RADseq
Marscarenes
1008Fine-scale variation of nuclear and chloroplast genomes in a Johnsongrass (Sorghum halepense) population
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Population Genetics/GenomicsBusby, Andrew; McCann, Caitlin E.; Laycock, William A.; Pate, Kayln N.; Hofford, Nate; Motley, M'Kayla; McKain, Michael.chloroplast
transposable elements
Population genomics
clonality
480From CartograTree to CartograPlant: improving plant health and productivity in the context of a changing climate
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Population Genetics/GenomicsCobo-Simon, Irene; Herndon, Nic; Staton, Margaret; Grau, Emily; Buehler, Sean; Richter, Peter; Ramnath, Risharde; Demurjian, Charles; Almsaeed, Abdullah; Wegrzyn, Jill.
635Gemmamyces piceae causing bud blight disease of spruce in Alaska is different from European populations
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Population Genetics/GenomicsGabriel Peralta, Sergio Manuel; Gambhir, Nikita; Adams, Gerard; Winton, Loretta; Cerny, Karel; Everhart, Sydney.Emerging disease
Spruce
Gemmamyces piceae
Population Genetics
944Genetic diversity and population structure of capirona (Calycophyllum spruceanum Benth.) from the Peruvian Amazon assessed by RAPD markers
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Population Genetics/GenomicsSaldaña, Carla L.; Cancan, Johan D.; Cruz, Wilbert; Correa, Mirian Y.; Ramos, Miriam; Cuellar, Eloy; Arbizu, Carlos.Amazon Forest
capirona
molecular markers
genetic diversity
genetic structure
1023Genetic Diversity and Spatial Genetic Structure ofGuzmania monostachia(Bromeliaceae)in Florida
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Population Genetics/GenomicsKrupar, Shelby; Cellinese, Nico.Bromeliaceae
phylogenetics
Population genomics
1118Genetic Variation Associated with Differential Response to Fire Among Populations of Cheatgrass (Poaceae, Bromus tectorum)
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Population Genetics/GenomicsTamrakar, Rubin; Milligan, Brook; Buenemann, Michaela; Lehnhoff, Erik; Bailey, C. Donovan.Bromus
HybPiper
FastStructure
Population
847Genome-wide identification and assessment of simple sequence repeat markers in Ipomoea species
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Population Genetics/GenomicsN Unamba, Chibuikem I; Singh, Gagandeep; Singh, Pradeep; Seth, Romit; Agbagwa, Ikechukwu O; Sharma, Ram K.simple sequence repeat
Markers
Genome
Ipomoea
320Identifying candidate genes contributing to nectar trait divergence in the selfing syndrome
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Population Genetics/GenomicsLiao, Irene; Cao, Gongyuan; Rifkin, Joanna; Rausher, Mark.nectar
trait divergence
quantitative genetics
Population genomics
Transcriptome
candidate genes
251Implications of whole genome duplication on local adaptation in Andropogon gerardi
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Population Genetics/GenomicsPhillips, Alyssa; AuBuchon-Elder, Taylor; Seetharam, Arun; Hufford, Matthew; Kellogg, Elizabeth; Forrestel, Elisabeth J.; Ross-Ibarra, Jeffrey.
504Insights from publicly available sequence data for Cannabis sativa
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Population Genetics/GenomicsMcCormick, Anna Halpin; Law, Kerin; Heyduk, Karolina; Kantar, Michael; Masalia, Rishi.Cannabis
Genetics
Public Data
domestication
Genome skimming
228Integration of Public Policy and Conservation Genomics: Penstemon lemhiensis (Plantaginaceae) Conservation
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Population Genetics/GenomicsSagatelova, Mary; Rodriguez-Peña, Rosa A.; Rodriguez-Peña, Rosa A.; Wolfe, Andi.Population Genetics
Public Policy
conservation
384Introgression of cultivar genes into wild carrot populations
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Population Genetics/GenomicsHernandez, Fernando; Brunet, Johanne.Introgression
Daucus carota
gene flow
Gene editing
Invasiveness
576Modeling the dynamics of multiple origins and gene flow in autopolyploids and their diploid progenitors
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Population Genetics/GenomicsGaynor, Michelle; Soltis, Douglas; Soltis, Pamela; Ponciano, Jose Miguel.polyploidy
Autopolyploidy
470Origins of Amaranthus tuberculatus (Waterhemp) in Central Valley Agroecosystems: A Population Genetics Approach Using Genotyping-By-Sequencing
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Population Genetics/GenomicsLopez, Alexander Joseph; Shrestha, Anil; Sosnoskie, Lynn; Waselkov, Katherine.Waterhemp
Population Genetics
340Phylogeographic analysis of Saxifraga fortunei complex (Saxifragaceae) reveals multiple origins of morphological and ecological variations in the Japanese Archipelago
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Population Genetics/GenomicsMagota, Kana; Sakaguchi, Shota; Lee, Jung-Sim; Yamamoto, Masaya; Takahashi, Daiki; Nagano, J. Atsushi; Setoguchi, Hiroaki.ddRAD-seq
East Asia
infraspecific polymorphisms
parallel evolution
Saxifraga
173Pollinators drive population structure in Neotropical plants
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Population Genetics/GenomicsDellinger, Agnes; Paun, Ovidiu; Juliane, Baar; Eva, Temsch; Diana, Fernández-Fernández; Jürg, Schönenberger.pollinator shifts
Andes
population differentiation
Melastomataceae
diversification
339Population genetics of the widespread perennial wildflower Phlox speciosa using microsatellite markers
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Population Genetics/GenomicsGill, Pawanpreet; Athwal, Savneesh; Aguilar-Gutierrez, Estefania; Waselkov, Katherine.Phlox
Western North America
microsatellites
Phlox speciosa
Washington
646Population Genomics of the Native and Invaded California Range of Palmer Amaranth (Amaranthus palmeri)
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Population Genetics/GenomicsDuque, Josue; Lopez, Alexander Joseph; Lum, Romy; Waselkov, Katherine.Amaranthus palmeri S. Watson
Population Genetics
SNP molecular markers
127Range-wide predictors of landscape genetic structure within a foundational plant of the Great Basin
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Population Genetics/GenomicsFaske, Trevor; Agneray, Alison; Jahner, Joshua; Richardson, Bryce; Leger, Elizabeth; Parchman, Thomas.Landscape genetics
hybridization
Genetic-environment association
744Tapping into genomic resources for domestication of Bigleaf lupine (Lupinus polyphyllus Lindl.): a potential perennial food and forage crop of the future
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Population Genetics/GenomicsCiotir, Claudia; Rubin, Matthew; Kantar, Michael; Bhakta, Niyati; Harris, Zachary; Baden, Heide Maria; Herron, Sterling A; Frawley, Emma; Schlautman, Brandon; Hübner, Sariel; Miller, Allison.de novo domestication
evolution
germplasm
genetic diversity
lupine
Population genomics
perennial grain crops
sustainable intensification
589Testing for Cryptic Species in Physcomitrium pyriforme using target capture sequencing of 800 nuclear genes
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Population Genetics/GenomicsWilliams, Lindsay; Patel, Nikisha; Medina, Rafael; Goffinet, Bernard; Johnson, Matthew.Physcomitrium
bryophyte
Bryophytes
Population Genetics
biogeography
cryptic species
Funariaceae
634The almighty Ricinus: a phylogenomic study sheds new light on the historical domestication and invasive potential of castor bean
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Population Genetics/GenomicsVillaverde, Tamara; Villa Machío, Irene; Caujape-Castells, Juli; Riina, Ricarda; Sanmartin, Isabel.
904The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis., Rubiaceae)
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Population Genetics/GenomicsArbizu, Carlos; Ferro-Mauricio, Rubén; Chávez-Galarza, Julio; Guerrero-Abad, Juan; Vásquez, Héctor; Maicelo, Jorge.genomics
quina
chloroplast
Rubiaceae
NGS
163The evolutionary-genomic history of genes underlying serpentine tolerance in Caulanthus amplexicaulis var barbarae
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Population Genetics/GenomicsDaundasekara, Kasuni; Garza, Elyssa; Pepper, Alan.Brassicaceae
serpentine
hybridization
phylogeny
candidate genes
928The role of ancestral polymorphisms and hybrid incompatibilities in Hawaii’s Metrosideros adaptive radiation
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Population Genetics/GenomicsChoi, Jae Young; Dai, Xiaoguang; Alam, Ornob; Peng, Julie; Rughani, Priyesh; Hickey, Scott; Harrington, Eoghan; Juul, Sissel; Ayroles, Julien; Sakishima, Tomoko; Kirby, Angalee; Purugganan, Michael; Stacy, Elizabeth.Metrosideros
adaptive radiation
Population genomics
Speciation
Reproductive Isolation
404The role of history and environment in shaping fragmented distributions of the emblematic serotinous pines of the coastal Pacific Slope
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Population Genetics/GenomicsGalland, Lanie; Bisbing, Sarah; Parchman, Thomas.
579Understanding population structure of northenr red oak (Quercus rubra) in Minnesota
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Population Genetics/GenomicsGomez Quijano, Maria Jose; Gross, Briana L.; Etterson, Julie R..GBS
common garden
Quercus
Introgression
hybridization
population genetic structure
RAD-seq data
700Using RADseq for ex situ conservation of critically endangered cycads
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Population Genetics/GenomicsJones, Maia; Handley, Vanessa; Nagalingum, Nathalie.Encephalartos
Zamiaceae
RADseq
Population genomics

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